Mystery solved: the Volvo pump that had misaligned things had somehow, in the way of failing, slid back, impeller shaft and all, about 1/4 inch. When I compared it side by side with two other pumps it became obvious-the whole pump was actually shorter. The flange is always 10mm back from the tip of the shaft. How that shortening had happened and why, well, we'll never know! The timing belt cover was positioned properly, the rubbing damage occurred due to the whole impeller shaft being out of position and too far back by 1/4 inch. Thanks to all!
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