You properly described how you installed the pads and rotors... and I assume you properly checked the rotors for glaze or improper surface and cleaned them properly with brake cleaner before installing them, but you failed to mention anything about installing shims between the brake pads and the calipers. Shims are an important part of the braking system used primarly to reduce any noise transmitted up into the car. This noise stems from the pads temporarily attaching to the disk and traveling with it until they hit the caliper and break loose - thousands of times per second, producing various kinds of noises. Shims allow the pad to move without repeating this cycle all the time, quieting the noise. Install hi-temp grease between the pads and the shims, effectively sandwiching the grease so it will not hit the caliper or the rotor.
Good luck, and let us know how it goes!
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-Flup, 240DL Wagon, 2 subs in the trunk, Dancing Bears Sticker to top it off :)
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